Features

The clients provided with CLC Genomics Factory are our user-friendly, yet advanced, CLC Genomics Workbenches. From these clients you can select whether to run small jobs locally on your computer or use the calculation power at hand on the server - simply use the user interface.

CLC Genomics factory is a turnkey solution providing your organization with a wide range of high-throughput sequencing tools - to mention a few:

Accelerated algorithms accessible through graphical-interface

NGS algorithms: Read mapping De novo assembly ChIP-sequencing SNP detection DIP detection Small RNA analysis Tag Profiling, incl. SAGE screen analysis

Server architecture

CLC Genomics Server included: Three-tier server architecture Easy integration with other applications and services Secure access control framework and central action logging

Software for client computers

CLC Genomics Workbenches included* Please read the details on our various offers in Configurations*.

Genomics

Whole genome re-sequencing and targeted re-sequencing of genomes of any size and type - from bacteria and vira to humans
De novo sequencing of an unlimited number of reads, for genomes up to 50 mega bases
SNP/DIP detection and identification of genomic rearrangements
Visualization and interactive graphical manipulation of results

Transcriptomics

Digital Gene Expression based on RNA-Seq, including a wide range of downstream gene expression analyses
Discovery of novel transcripts/exons
Ability to work with Expression Arrays and RNA-seq results at the same time, enabling comparison of results
Tag Profiling, including SAGE screen analyses
Small RNA analysis
Interactive views of assemblies and derived gene expression data

Epigenomics

Chromatin immunoprecipitation sequencing (ChIP-seq) analysis
Peak finding and peak refinement
Graph and table of background distribution and false discovery rate
Peak table and annotations